Model Merging Improves Zero-Shot Generalization in Bioacoustic Foundation Models

Abstract

Foundation models capable of generalizing across species and tasks represent a promising new frontier in bioacoustics, with NatureLM being one of the most prominent examples. While its domain-specific fine-tuning yields strong performance on bioacoustic benchmarks, we observe that it also introduces trade-offs in instruction-following flexibility. For instance, NatureLM achieves high accuracy when prompted for either the common or scientific name individually, but its accuracy drops significantly when both are requested in a single prompt. We address this by applying a simple model merging strategy that interpolates NatureLM with its base language model, recovering instruction-following capabilities with minimal loss of domain expertise. Finally, we show that the merged model exhibits markedly stronger zero-shot generalization, achieving over a 200% relative improvement and setting a new state-of-the-art in closed-set zero-shot classification of unseen species.

Publication
NeurIPS 2025 Workshop on AI for non-human animal communication
Donato Crisostomi
Donato Crisostomi
PhD Student

PhD student @ Sapienza, University of Rome | former Applied Science intern @ Amazon Search, Luxembourg | former Research Science intern @ Amazon Alexa, Turin

Emanuele Rodolà
Emanuele Rodolà
Full Professor
Emanuele Rossi
Emanuele Rossi
PostDoctoral Researcher